.. G2PT documentation master file, created by
   sphinx-quickstart on Sat Aug  2 19:43:41 2025.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

G2PT Documentation
==================

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   Home <self>
   Overview <source/readthedocs_overview.md>
   Tree Parser <source/tree_parser.md>
   Epistasis Analysis <source/epistasis_analysis.md>
   Epistasis Simulation <source/epistasis_simulation.md>
   Sankey Visualization <source/sankey_visualization.md>
   Sparse Attention <08_sparse_attention.md>

API Documentation
==================

.. toctree::
   :maxdepth: 2
   :caption: API Documentation

   api/tree
   api/snp2phenotype
   api/snp2p_dataset
   api/snp2p_trainer
   api/snp2p_model_utils
   api/snp2p_trainer_utils
   api/epistasis_discovery
   api/epistasis_retrieval_evaluation
   api/epistasis_simulation

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`